I was listening to the older podcasts (as I am one to do when its mid week and I need something to keep me awake during long study nights) and the podcasts dealing with Baltars trial came around. There was a discussion about why they chose a tribunal of ships captains instead of Baltars peers.
It dawned on me, the captains are probably the most impartial of all the people in the fleet. Think about it, most of the people left the fleet to go live on New Caprica, where you were shat on every day. But there was a good number of ships who were still in orbit, ships who needed captains, ships who jumped away before the entire New Caprica/Cylon ordeal. If they werent around for that, they wouldnt have an automatic bias against him.
It makes sense to me now.
Doh!